Kyle Johnsen
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  • Publications
    • Bridging Model and Experiment in Systems Neuroscience with Cleo: The Closed-Loop, Electrophysiology, and Optophysiology Simulation Testbed
    • Modeling Latent Dynamics of the Autonomic Nervous System in Response to Trauma Recall and Non-Invasive Vagus Nerve Stimulation
    • Probabilistic Decomposed Linear Dynamical Systems for Robust Discovery of Latent Neural Dynamics
    • Manifold Contrastive Learning with Variational Lie Group Operators
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    • NAISys 2024 poster
    • Optogenetics GRC 2024 poster
    • SNUFA 2023 poster
    • NMC 4.0 cleosim Flash Talk
  • Projects
    • PhD dissertation proposal
    • 'Step the Brain along a Path' Lobby Installation
    • CLOCTools
    • tklfp: TeleΕ„czuk Kernel LFP
    • Cleo: Closed-Loop, Electrophysiology, and Optophysiology experiment simulation testbed
    • MMAPPR2: Mutation Mapping from RNA Sequences
  • Blog
    • Sonification of neural data: my experience and outlook
    • Mean field variational inference
    • Approximate inference via Gibbs sampling
    • Markov chain Monte Carlo sampling
    • Parameter learning in probabilistic graphical models
    • Learning maximum likelihood tree structure with the Chow-Liu algorithm
    • Expectation-maximization for a Markov chain mixture model
    • Learning edge direction in a Bayesian network model
    • Comparing the basic and extended Kalman filters
    • Embedding a Starboard Notebook
    • Looping Gaussian Process Noise
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Last updated on Sep 24, 2025

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