PhD dissertation proposal
Towards Optogenetic Feedback Control of Neural Population Dynamics
Projects
'Step the Brain along a Path' Lobby Installation
A foray into neuroscience-based music and art
CLOCTools
A set of software to aid in real-time closed-loop optogenetic control. I have been involved in developing/maintaining `ldsCtrlEst` and supervising the development of `lqmpc` and …
tklfp: Teleńczuk Kernel LFP
A lightweight Python package approximating LFP from spikes alone as in Teleńczuk et al., 2020. Developed for use in Cleo to prototype real-time manipulation of LFP, but hopefully …
Cleo: Closed-Loop, Electrophysiology, and Optophysiology experiment simulation testbed
A Python package built around Brian 2 designed as a testbed for bridging computational models and experiments for mesoscale neuroscience. Specifically, it allows for convenient …
MMAPPR2: Mutation Mapping from RNA Sequences
The fruit of my undergraduate research in bioinformatics. MMAPPR2 maps mutations resulting from pooled RNA-seq data from the F2 cross of forward genetic screens.